PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 490762
Common NameARALYDRAFT_490762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 278aa    MW: 31412.9 Da    PI: 4.6429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
490762genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.1e-2197147256
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
              y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+ge
  490762  97 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDLAAYKLRGE 147
             59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.77E-3496154No hitNo description
SMARTSM003806.4E-3797160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-3297155IPR001471AP2/ERF domain
PROSITE profilePS5103223.53897154IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2497154IPR016177DNA-binding domain
PfamPF008475.3E-1598147IPR001471AP2/ERF domain
PRINTSPR003671.9E-1198109IPR001471AP2/ERF domain
PRINTSPR003671.9E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MATIDMFNSN TDFSDPFQEE LMKALQPYSN TVSSSSSPSP YSNTVFGFNQ TTPLGLNQLT  60
PYQIHQIQNQ INQRRNIISP NLVPKPVPMK NMATQKLYRG VRQRHWGKWV AEIRLPKNRT  120
RLWLGTFDTA EEAAMAYDLA AYKLRGEFAR LNFPQFRHED GYYGGGSCFN PLHSSVDAKL  180
QAICQSLRKT EDVDLPCSET ELFPPKTEYQ ESEYGFLRSD ENSFSDESQV ESSSPESGIT  240
TFLNFSDSGF DEIGSFGLEK FPSVEIDWDA ISKLSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2196154160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2193154163ATERF1
3gcc_A1e-2193154163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226050.0AL022605.3 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project).
GenBankAL1615950.0AL161595.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91.
GenBankBT0257190.0BT025719.1 Arabidopsis thaliana At4g39780 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868928.10.0hypothetical protein ARALYDRAFT_490762
SwissprotO656650.0ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLD7M9540.0D7M954_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.7__195__AT4G39780.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-145ERF family protein